About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22619343_22620013_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22619343 - 22620013
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
GCTTCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAG
U12 Branch Point Sequence:
GGGCCCCCAGCT
Flanking Amino Acid:
IFADVTSLSHLAIGANPLYC
Intron Amino Acid Position:
842

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
69.1
35.8
Major BPS
39.5
-0.6
1.5
43.7
39.4
Major PPT
72.7
0.51
0.8
65.9
30.2
Minor 5ss
34.7
-1.7
3.4
53.4
43.8
Minor BPS
42
-0.5
2
56.85
44.6

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032567
22499353 - 22626132
126780
ENSAPLT00000029549
22499353 - 22623948
124596
ENSAPLT00000025886
22499353 - 22623948
124596
ENSAPLT00000014255
22499353 - 22623948
124596