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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22620178_22620408_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22620178 - 22620408
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
TCCCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCACAT
U12 Branch Point Sequence:
ACGGCCACATCC
Flanking Amino Acid:
TTPAKKFECQGPPALSVQAK
Intron Amino Acid Position:
897

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
63.1
43.4
Major BPS
48.9
-0
1.2
56.9
40.5
Major PPT
74.6
0.55
0.7
69
24.8
Minor 5ss
33.8
-1.8
2.8
34.8
41.4
Minor BPS
40.1
-0.7
2
45.65
42.9

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025886
22499353 - 22623948
124596
ENSAPLT00000014255
22499353 - 22623948
124596
ENSAPLT00000032567
22499353 - 22626132
126780
ENSAPLT00000032183
22499353 - 22623948
124596
ENSAPLT00000029549
22499353 - 22623948
124596