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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22622656_22622747_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22622656 - 22622747
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGCC
5'SS Class:
major
3'SS Sequence:
GCCCTCCCGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGACAC
U12 Branch Point Sequence:
GGTGACACAGCC
Flanking Amino Acid:
PGTHPSSAIYSAETINDGQF
Intron Amino Acid Position:
1218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
60.6
40.1
Major BPS
46
-0.2
1.3
52.4
43.3
Major PPT
62
0.27
1
53.9
36.6
Minor 5ss
35
-1.7
3.7
51
45.8
Minor BPS
37.7
-0.9
2
46.78
41.4

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032183
22499353 - 22623948
124596
ENSAPLT00000029549
22499353 - 22623948
124596
ENSAPLT00000025886
22499353 - 22623948
124596
ENSAPLT00000014255
22499353 - 22623948
124596
ENSAPLT00000032567
22499353 - 22626132
126780