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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22623264_22623410_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22623264 - 22623410
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGGGTACCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
CTATGGGTACCC
Flanking Amino Acid:
QPRGGPCQGHKCVHGLCLPL
Intron Amino Acid Position:
1366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
72.1
31.2
Major BPS
70
0.5
1
59.3
39.1
Major PPT
63.1
0.3
1
55.4
40.4
Minor 5ss
30.2
-2.3
3.1
36.2
34.2
Minor BPS
35.3
-1.1
2.8
50.03
46.7

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029549
22499353 - 22623948
124596
ENSAPLT00000025886
22499353 - 22623948
124596
ENSAPLT00000014255
22499353 - 22623948
124596
ENSAPLT00000032567
22499353 - 22626132
126780
ENSAPLT00000032183
22499353 - 22623948
124596