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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2265776_2282341_R

Intron Information:

Intron Rank:
133097
Intron Class:
major
Intron Phase:
Intron Coordinates:
2265776 - 2282341
Intron Length:
16566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTACCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTCTCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.7
31.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.8
0.58
0.8
66.1
34.8
Minor 5ss
34
-1.8
3
43
44.6
Minor BPS
61.6
0.44
1.6
76.4
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018844
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046027
2265535 - 2282626
17092
ENSAPLT00000045249
2259183 - 2304275
45093
ENSAPLT00000042844
2259183 - 2322955
63773