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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22667988_22681543_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
22667988 - 22681543
Intron Length:
13556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAATG
5'SS Class:
major
3'SS Sequence:
CTAATGTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GCTTCCTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
75.5
40.6
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
75.6
0.58
1
68.9
41.6
Minor 5ss
42.6
-0.8
3
57.6
46.6
Minor BPS
75.8
0.81
1.3
77.66
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019156
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028672
22658978 - 22682106
23129