Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22727641_22728457_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

22727641 - 22728457

Intron Length:

817

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGGAGTGG

5'SS Class:

weak_major

3'SS Sequence:

CGGAGACACCGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GAGACAC

U12 Branch Point Sequence:

GGCTCGGAGACA

Flanking Amino Acid:

ELLQPTIPRAWLAGVP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.1

0.05

1.1

43.7

40.4

Major BPS

42.9

-0.4

1.2

44.4

38.7

Major PPT

40.7

-0.5

1.6

28.5

36.2

Minor 5ss

31.1

-2.2

3.6

40.3

46.5

Minor BPS

36.7

-1

2.6

47.24

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028566

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040233

22725445 - 22728477

3033