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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22767030_22767130_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22767030 - 22767130
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCCT
U12 Branch Point Sequence:
TCCCCCTTCCTC
Flanking Amino Acid:
EKGSEEYVKELLLYELGFLV
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
29.7
-1.2
4.2
63
43.2
Major PPT
80.6
0.69
0.7
72.7
32.1
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
38.4
-0.9
3.5
54.77
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025660
22764986 - 22772584
7599
ENSAPLT00000012811
22765593 - 22772584
6992
ENSAPLT00000046790
22764986 - 22771991
7006
ENSAPLT00000041008
22765593 - 22771991
6399