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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22767337_22767705_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22767337 - 22767705
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
CTTTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GCCTCCTGACCC
Flanking Amino Acid:
GSVLLLSALLLAGDVCAFIS
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
65.6
40.2
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
86.7
0.83
0.7
81
24.1
Minor 5ss
33.8
-1.8
3.4
50
46.2
Minor BPS
51.3
0.02
1.8
59.68
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025660
22764986 - 22772584
7599
ENSAPLT00000012811
22765593 - 22772584
6992
ENSAPLT00000046790
22764986 - 22771991
7006
ENSAPLT00000041008
22765593 - 22771991
6399