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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22767827_22767941_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22767827 - 22767941
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCATGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CCGTGCTGACAC
Flanking Amino Acid:
LGTYLASIPQQVNFVIDRSD
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1.1
62.9
43
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
80
0.68
0.7
73.6
24.6
Minor 5ss
33.9
-1.8
4
48.2
47.5
Minor BPS
39.7
-0.8
2.1
43.62
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025660
22764986 - 22772584
7599
ENSAPLT00000012811
22765593 - 22772584
6992
ENSAPLT00000046790
22764986 - 22771991
7006
ENSAPLT00000041008
22765593 - 22771991
6399