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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22768550_22768641_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22768550 - 22768641
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGATG
5'SS Class:
major
3'SS Sequence:
CTCTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
GTCACCGCAAGC
Flanking Amino Acid:
GVTFTANYSTVPSVEQQLEA
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
69.9
42.1
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
78.3
0.64
0.7
73.1
25.2
Minor 5ss
30.9
-2.2
3.2
40.5
45.5
Minor BPS
41.2
-0.6
2.3
51.91
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025660
22764986 - 22772584
7599
ENSAPLT00000012811
22765593 - 22772584
6992
ENSAPLT00000046790
22764986 - 22771991
7006
ENSAPLT00000041008
22765593 - 22771991
6399