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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22768864_22768974_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22768864 - 22768974
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAGG
5'SS Class:
major
3'SS Sequence:
CCGTCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CTGTCCCCATCC
Flanking Amino Acid:
VQNQTRDVVTKTQDQLGLIQ
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
66.4
45.1
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
72.9
0.51
0.8
65.7
30.3
Minor 5ss
40.5
-1.1
2.9
49.1
41.3
Minor BPS
45.7
-0.3
2.1
59.24
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025660
22764986 - 22772584
7599
ENSAPLT00000012811
22765593 - 22772584
6992
ENSAPLT00000046790
22764986 - 22771991
7006
ENSAPLT00000041008
22765593 - 22771991
6399