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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22769135_22769231_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22769135 - 22769231
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCGAG
5'SS Class:
major
3'SS Sequence:
CCCATGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
GGGTCCTGAGCC
Flanking Amino Acid:
QQPLTDLDGIRWNVCAFLCC
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
59.3
41.8
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
63.6
0.31
0.9
53.3
36.6
Minor 5ss
28.8
-2.4
3.5
36.3
48.1
Minor BPS
52.5
0.06
1.8
61.37
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046790
22764986 - 22771991
7006
ENSAPLT00000041008
22765593 - 22771991
6399
ENSAPLT00000012811
22765593 - 22772584
6992