About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22769135_22769560_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22769135 - 22769560
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCGAG
5'SS Class:
major
3'SS Sequence:
TCTGTGCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCGAC
U12 Branch Point Sequence:
GGGTGCCGACGG
Flanking Amino Acid:
QQPLTDLDGIRGVGFSFIFS
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
59.3
41.8
Major BPS
47.5
-0.1
1.3
43.8
40.8
Major PPT
72.1
0.5
0.9
65.6
36.1
Minor 5ss
28.8
-2.4
3.5
36.3
48.1
Minor BPS
30.6
-1.6
2.1
30.19
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025660
22764986 - 22772584
7599