About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22770302_22770500_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22770302 - 22770500
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGGG
5'SS Class:
major
3'SS Sequence:
CTGCCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAG
U12 Branch Point Sequence:
TCAGCTCCACCT
Flanking Amino Acid:
PPNFTHTLQQLDQTLTLVSL
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
63.1
43.4
Major BPS
49.4
-0
1.7
60.7
45.9
Major PPT
80.7
0.69
0.8
72.4
37.7
Minor 5ss
25.2
-2.8
3.2
31
43.1
Minor BPS
41
-0.6
2
57.18
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025660
22764986 - 22772584
7599
ENSAPLT00000012811
22765593 - 22772584
6992
ENSAPLT00000046790
22764986 - 22771991
7006
ENSAPLT00000041008
22765593 - 22771991
6399