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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22771133_22771321_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22771133 - 22771321
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGCTCG
5'SS Class:
major
3'SS Sequence:
CCTGCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
GGCATCTCCACT
Flanking Amino Acid:
GREVVNIIKNETWAFLEGML
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.3
59.3
42.4
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
68
0.41
0.8
57.9
33.2
Minor 5ss
40.1
-1.1
2.9
47.2
41.9
Minor BPS
44.5
-0.3
2
58.1
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041008
22765593 - 22771991
6399
ENSAPLT00000025660
22764986 - 22772584
7599
ENSAPLT00000012811
22765593 - 22772584
6992
ENSAPLT00000046790
22764986 - 22771991
7006