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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22771391_22771483_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22771391 - 22771483
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
TCCATGTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CCCCCTTCCATG
Flanking Amino Acid:
NTYIAWAKSSLRRDVARCKP
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.31
1.3
55.8
44.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
70
0.45
0.9
60.9
40.1
Minor 5ss
29.1
-2.4
2.7
27.7
36.3
Minor BPS
39.9
-0.9
1.8
35.73
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025660
22764986 - 22772584
7599
ENSAPLT00000012811
22765593 - 22772584
6992
ENSAPLT00000046790
22764986 - 22771991
7006
ENSAPLT00000041008
22765593 - 22771991
6399