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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22771574_22771646_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22771574 - 22771646
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
CCCCATCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
GTCCCCATAACT
Flanking Amino Acid:
ITCDYLLDSLNAFWFSLGWC
Intron Amino Acid Position:
740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
55.8
43.4
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
67.4
0.39
0.8
60
29.3
Minor 5ss
30.4
-2.2
3.3
34.5
43.8
Minor BPS
64.9
0.55
1.7
79.67
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012284
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041008
22765593 - 22771991
6399
ENSAPLT00000025660
22764986 - 22772584
7599
ENSAPLT00000012811
22765593 - 22772584
6992
ENSAPLT00000046790
22764986 - 22771991
7006