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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22807615_22808921_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22807615 - 22808921
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CCCTTTTCAATA
Flanking Amino Acid:
CLIILTCIAEDQYANAFLHD
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
72
0.49
0.8
69
30.1
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
49.4
-0
1.5
53.75
40.2

Associated Gene:

Gene:
ARMH3
Ensembl Gene ID:
ENSAPLG00000011883
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043501
22784655 - 22872436
87782
ENSAPLT00000012418
22784655 - 22877893
93239