Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22810114_22811596_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22810114 - 22811596

Intron Length:

1483

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTGTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATCAT

U12 Branch Point Sequence:

AATACTTTATCA

Flanking Amino Acid:

PCRPLVCAVLDLMVEFIVTH

Intron Amino Acid Position:

449

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

87.3

Major BPS

88.2

0.95

0.9

88.3

28.5

Major PPT

89.3

0.88

0.8

87.9

29.4

Minor 5ss

36.7

-1.5

52.2

44.4

Minor BPS

59.4

0.29

1.6

67.85

38.3

Associated Gene:

Gene:

ARMH3

Ensembl Gene ID:

ENSAPLG00000011883

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043501

22784655 - 22872436

87782

ENSAPLT00000012418

22784655 - 22877893

93239