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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22814603_22829415_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22814603 - 22829415
Intron Length:
14813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTGC
5'SS Class:
major
3'SS Sequence:
TGTTTTCTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTTATTCAAAA
Flanking Amino Acid:
LHYTWRELWSALINLLKFLM
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
66.2
40.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
80.3
0.68
0.8
73.8
36.9
Minor 5ss
39.5
-1.2
3
53.6
43.4
Minor BPS
57.3
0.23
1.8
74.17
37

Associated Gene:

Gene:
ARMH3
Ensembl Gene ID:
ENSAPLG00000011883
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043501
22784655 - 22872436
87782
ENSAPLT00000012418
22784655 - 22877893
93239