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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2282507_2304182_R

Intron Information:

Intron Rank:
133101
Intron Class:
major
Intron Phase:
Intron Coordinates:
2282507 - 2304182
Intron Length:
21676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TATTGCTTCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTCTCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
67.7
37.5
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
74.9
0.56
0.8
69.9
36.2
Minor 5ss
32.5
-2
2.7
38.4
34.2
Minor BPS
74.6
0.86
1.6
87.9
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018844
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045249
2259183 - 2304275
45093