Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2282507_2322116_R

Intron Information:

Intron Rank:

133098

Intron Class:

major

Intron Phase:

Intron Coordinates:

2282507 - 2322116

Intron Length:

39610

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAACA

5'SS Class:

strong_major

3'SS Sequence:

TATTGCTTCGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTTAT

U12 Branch Point Sequence:

TTCTCCTTTATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

76.1

32.7

Major BPS

71.5

0.54

1.1

63.3

42.8

Major PPT

74.9

0.56

0.8

69.9

36.2

Minor 5ss

39.8

-1.1

2.8

Minor BPS

74.6

0.86

1.6

87.9

37.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018844

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042844

2259183 - 2322955

63773