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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22865464_22869490_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22865464 - 22869490
Intron Length:
4027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTTTCTTCACA
Flanking Amino Acid:
NHISQLSEDQPRRDTRYLRL
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87.8
0.85
0.7
83.3
25.1
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
69.2
0.6
1.7
78.35
38.8

Associated Gene:

Gene:
ARMH3
Ensembl Gene ID:
ENSAPLG00000011883
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043501
22784655 - 22872436
87782