Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22936126_22939662_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22936126 - 22939662

Intron Length:

3537

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGAC

5'SS Class:

strong_major

3'SS Sequence:

TTATTTCCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

ATAACTTTAATC

Flanking Amino Acid:

SRRFLCGVVEGFYGRPWVME

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

72.6

32.3

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

81.5

0.71

0.8

74.7

Minor 5ss

24.1

-3

3.3

43.4

Minor BPS

68.5

0.56

1.2

70.41

34.6

Associated Gene:

Gene:

OGA

Ensembl Gene ID:

ENSAPLG00000011067

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035886

22935388 - 22959141

23754

ENSAPLT00000011559

22935388 - 22947299

11912