Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22940139_22941331_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22940139 - 22941331

Intron Length:

1193

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAATTACT

5'SS Class:

major

3'SS Sequence:

ATTTGATTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

TACCTCTGAAAT

Flanking Amino Acid:

WREMYSVEEAEQLMTLIAAA

Intron Amino Acid Position:

120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

77.3

37.6

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

81.9

0.72

0.9

78.3

39.6

Minor 5ss

-1.4

2.7

44.8

42.6

Minor BPS

53.5

0.19

1.6

68.83

41.3

Associated Gene:

Gene:

OGA

Ensembl Gene ID:

ENSAPLG00000011067

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035886

22935388 - 22959141

23754

ENSAPLT00000011559

22935388 - 22947299

11912