Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22944644_22945890_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22944644 - 22945890

Intron Length:

1247

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTGAGTTTG

5'SS Class:

major

3'SS Sequence:

TTCTTATTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTCTTCTTATTC

Flanking Amino Acid:

QEFGVPQQYSSRQVAHSGAK

Intron Amino Acid Position:

402

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

68.9

38.5

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

85.8

0.81

0.7

84.7

28.9

Minor 5ss

40.6

-1.1

54.8

43.4

Minor BPS

65.8

0.47

1.6

73.26

38.6

Associated Gene:

Gene:

OGA

Ensembl Gene ID:

ENSAPLG00000011067

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035886

22935388 - 22959141

23754

ENSAPLT00000011559

22935388 - 22947299

11912