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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22947030_22947188_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22947030 - 22947188
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCACTATTTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTGTTTTAAAG
Flanking Amino Acid:
SMVKSFVQWLAMIAVNLLWY
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.6
0.4
1.1
67.9
36.7
Minor 5ss
31.6
-2.1
3.3
41.1
45.4
Minor BPS
49.5
-0.1
1.6
50.95
44.1

Associated Gene:

Gene:
OGA
Ensembl Gene ID:
ENSAPLG00000011067
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011559
22935388 - 22947299
11912