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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22950496_22951364_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22950496 - 22951364
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAATA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTGTTTTCACA
Flanking Amino Acid:
FRGGLAGEFQRLLPIDGAND
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.2
73.4
37.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
87.8
0.85
0.7
83.5
31.6
Minor 5ss
48.7
-0.1
2.6
66.5
44.5
Minor BPS
58.6
0.26
1.8
73.92
38.7

Associated Gene:

Gene:
OGA
Ensembl Gene ID:
ENSAPLG00000011067
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035886
22935388 - 22959141
23754