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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22951470_22952944_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22951470 - 22952944
Intron Length:
1475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
GCGACTTGAAAT
Flanking Amino Acid:
TIRPYFPKDEASVYKICREM
Intron Amino Acid Position:
728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
31.6
Major BPS
71.6
0.54
1
72
33.1
Major PPT
78.5
0.64
0.7
77.2
24.7
Minor 5ss
35.4
-1.7
3.2
50.9
45.5
Minor BPS
48.3
-0
1.6
59.63
43.4

Associated Gene:

Gene:
OGA
Ensembl Gene ID:
ENSAPLG00000011067
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035886
22935388 - 22959141
23754