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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22953031_22954007_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22953031 - 22954007
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ACTGACTGAATT
Flanking Amino Acid:
FHSLPDLIGDKLVGGLLTLS
Intron Amino Acid Position:
756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
84.8
32.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
79.4
0.66
0.9
73.7
36.2
Minor 5ss
42.3
-0.8
3.1
59.9
38.7
Minor BPS
50.9
0.11
1.7
68.1
42.9

Associated Gene:

Gene:
OGA
Ensembl Gene ID:
ENSAPLG00000011067
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035886
22935388 - 22959141
23754