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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22954201_22955888_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22954201 - 22955888
Intron Length:
1688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTATA
5'SS Class:
major
3'SS Sequence:
ATATTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TTTCCCATATTC
Flanking Amino Acid:
NSDKELSEAEKIMLSFHEEQ
Intron Amino Acid Position:
821

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
79.2
36.3
Major BPS
67.7
0.44
1
58
38.9
Major PPT
84.3
0.77
0.8
81.7
35.1
Minor 5ss
34.3
-1.8
2.9
42.6
44.3
Minor BPS
56.1
0.17
1.9
73.03
37.8

Associated Gene:

Gene:
OGA
Ensembl Gene ID:
ENSAPLG00000011067
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035886
22935388 - 22959141
23754