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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22956049_22956821_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22956049 - 22956821
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGTAAT
U12 Branch Point Sequence:
TTCTCCCTTACT
Flanking Amino Acid:
ACLLSSLKANGSRGAFCEVR
Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
76.8
34.8
Major BPS
56.9
0.17
1.4
59
44.6
Major PPT
83.7
0.76
0.7
80.9
24.2
Minor 5ss
47.6
-0.2
2.8
61.3
44.6
Minor BPS
63.7
0.51
2
85.27
40.9

Associated Gene:

Gene:
OGA
Ensembl Gene ID:
ENSAPLG00000011067
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035886
22935388 - 22959141
23754