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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22963908_22964161_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22963908 - 22964161
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGAGCT
5'SS Class:
major
3'SS Sequence:
CTTTTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGCTTCTCACTT
Flanking Amino Acid:
LPRHGWLNPDRCELTASTKS
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
63.8
40.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
85.5
0.8
0.8
76.9
37.3
Minor 5ss
34.9
-1.7
3.5
53.4
43.5
Minor BPS
49.6
0.05
1.8
68.05
43.4

Associated Gene:

Gene:
NPM3
Ensembl Gene ID:
ENSAPLG00000010935
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011384
22963706 - 22965634
1929