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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22964248_22964440_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22964248 - 22964440
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCCATTTTCACC
Flanking Amino Acid:
DSDHVLALSVVCLTEGAKDE
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
67.8
37.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.8
0.54
0.9
66.2
39.6
Minor 5ss
29.9
-2.3
3.3
35.1
42.4
Minor BPS
48.8
-0.1
1.8
57.48
42.1

Associated Gene:

Gene:
NPM3
Ensembl Gene ID:
ENSAPLG00000010935
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011384
22963706 - 22965634
1929