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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22964806_22964895_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22964806 - 22964895
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGGGCT
5'SS Class:
major
3'SS Sequence:
TTGTGTGTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAGAG
U12 Branch Point Sequence:
AGGTGGGTAACA
Flanking Amino Acid:
PVHLAGWHQITHREDISFED
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
64.6
39.8
Major BPS
43.5
-0.4
1.3
38.4
32.3
Major PPT
73.5
0.53
1
65.1
45.5
Minor 5ss
34.1
-1.8
3.7
53.5
44.4
Minor BPS
39.8
-0.7
2.7
53.88
44.7

Associated Gene:

Gene:
NPM3
Ensembl Gene ID:
ENSAPLG00000010935
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011384
22963706 - 22965634
1929