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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22965026_22965141_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
22965026 - 22965141
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAG
U12 Branch Point Sequence:
GCTGCTTTCAGC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
63.7
0.34
1.6
75
39.9
Major PPT
80.8
0.69
0.7
73.2
31.7
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
45.5
-0.3
2.1
53.83
44.6

Associated Gene:

Gene:
NPM3
Ensembl Gene ID:
ENSAPLG00000010935
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011384
22963706 - 22965634
1929