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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22973153_22976941_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22973153 - 22976941
Intron Length:
3789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGACG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
CCTCCCTCTATT
Flanking Amino Acid:
NAMAEDGDVHAKLIVETDTF
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.4
43.6
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
81.1
0.7
0.7
73.3
31.6
Minor 5ss
33.1
-1.9
3.1
42
44.3
Minor BPS
48.7
-0
1.9
65.57
45

Associated Gene:

Gene:
FGF8
Ensembl Gene ID:
ENSAPLG00000025762
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032777
22972939 - 22978903
5965