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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23016776_23019442_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23016776 - 23019442
Intron Length:
2667

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CTGACCCCAACC
Flanking Amino Acid:
RRETVLKWKRNLMPWMELDG
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
82.7
29.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
85.2
0.79
0.8
79.9
32.1
Minor 5ss
24.4
-2.9
4
34.7
35.3
Minor BPS
48
-0.1
2
60.3
44.4

Associated Gene:

Gene:
POLL
Ensembl Gene ID:
ENSAPLG00000010211
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011051
23001494 - 23062068
60575