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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23019629_23020797_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23019629 - 23020797
Intron Length:
1169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
AGCTGATACACT
Flanking Amino Acid:
LVNSHIVSGGGDGNIVLHKI
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.7
43.7
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
39.2
-1.2
2.8
41
45.3
Minor BPS
38.2
-0.8
2.4
55.73
46.2

Associated Gene:

Gene:
POLL
Ensembl Gene ID:
ENSAPLG00000010211
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011051
23001494 - 23062068
60575