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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23020931_23023403_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23020931 - 23023403
Intron Length:
2473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCATAAT
U12 Branch Point Sequence:
CGTGGCATAATG
Flanking Amino Acid:
VSGSRDRTAKVWSLSAGRVG
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
57.5
0.19
1.3
60.2
42.9
Major PPT
82.7
0.73
0.7
81.3
23.7
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
43.8
-0.6
2.1
48.42
45.4

Associated Gene:

Gene:
POLL
Ensembl Gene ID:
ENSAPLG00000010211
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011051
23001494 - 23062068
60575