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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23061332_23061498_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23061332 - 23061498
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
GTTACCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTTAC
U12 Branch Point Sequence:
TTTGTGTTACCC
Flanking Amino Acid:
IRYWDIRTSTRKCVREWEEP
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
53.7
0.09
1.4
49.1
46
Major PPT
73
0.52
0.9
65.9
35.7
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
48.5
-0.1
2.3
69.02
43.1

Associated Gene:

Gene:
POLL
Ensembl Gene ID:
ENSAPLG00000010211
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041762
23061191 - 23082283
21093
ENSAPLT00000011051
23001494 - 23062068
60575