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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23061641_23061874_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23061641 - 23061874
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TCTTCTTTGAAA
Flanking Amino Acid:
WDKRQTRCLQSFHLSSPTSS
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
72.6
32.3
Major BPS
74.8
0.62
1
67
39.8
Major PPT
92.3
0.95
0.6
88.3
21.5
Minor 5ss
24.1
-3
3.3
31
43.4
Minor BPS
69
0.59
1.4
75.09
36.4

Associated Gene:

Gene:
POLL
Ensembl Gene ID:
ENSAPLG00000010211
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041762
23061191 - 23082283
21093
ENSAPLT00000011051
23001494 - 23062068
60575