Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23062069_23073007_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23062069 - 23073007

Intron Length:

10939

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGTG

5'SS Class:

strong_major

3'SS Sequence:

TACTGGTGTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

TCTTTCTTACTG

Flanking Amino Acid:

LGSGKSRAGKQLQPNGTGER

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.87

0.8

35.2

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

68.7

0.42

1.1

65.1

45.3

Minor 5ss

28.6

-2.5

3.4

37.5

47.2

Minor BPS

62.2

0.25

1.7

66.07

42.7

Associated Gene:

Gene:

POLL

Ensembl Gene ID:

ENSAPLG00000010211

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048426

23061988 - 23082283

20296

ENSAPLT00000041762

23061191 - 23082283

21093