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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23066364_23069439_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23066364 - 23069439
Intron Length:
3076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTCAGTAAG
5'SS Class:
major
3'SS Sequence:
CTCTCGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
ACCACCTTATTT
Flanking Amino Acid:
RCCVVRTTNKKYYKKFPIPD
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
71.6
40.1
Major BPS
70
0.5
1
59.6
38.6
Major PPT
77.5
0.62
0.8
72.4
32.3
Minor 5ss
32.2
-2
2.6
34.6
34.6
Minor BPS
55.2
0.24
1.7
66.64
44.5

Associated Gene:

Gene:
DPCD
Ensembl Gene ID:
ENSAPLG00000010260
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010700
23064996 - 23072243
7248