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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23070523_23071121_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23070523 - 23071121
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
CTCCCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTAACGAAAACC
Flanking Amino Acid:
EYDVKTGQLVSRKWREKSTL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.1
35.1
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
81.3
0.7
0.7
75.4
26.8
Minor 5ss
35.6
-1.6
3.3
45.6
43.6
Minor BPS
43
-0.5
2.5
61.03
43.7

Associated Gene:

Gene:
DPCD
Ensembl Gene ID:
ENSAPLG00000010260
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010700
23064996 - 23072243
7248