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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23071203_23072179_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23071203 - 23072179
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
GCCTTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTCCCATTCACC
Flanking Amino Acid:
AASKTALLRDGKRKIHYLFE
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.2
59.8
41.3
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
70
0.45
0.9
60.8
40.3
Minor 5ss
36.5
-1.5
3.6
51.5
45.3
Minor BPS
52.8
0.07
2.1
69.17
42.2

Associated Gene:

Gene:
DPCD
Ensembl Gene ID:
ENSAPLG00000010260
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010700
23064996 - 23072243
7248