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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23074501_23077635_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23074501 - 23077635
Intron Length:
3135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTACTTGACT
Flanking Amino Acid:
GDFSQQGLSEKVCDDEDSEG
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.6
37.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
67.8
0.4
1
67
26.9
Minor 5ss
31.2
-2.1
3.5
46.7
48.6
Minor BPS
75.6
0.89
1.4
88.39
36.7

Associated Gene:

Gene:
POLL
Ensembl Gene ID:
ENSAPLG00000010211
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026747
23072117 - 23082283
10167
ENSAPLT00000010641
23064579 - 23082283
17705
ENSAPLT00000041762
23061191 - 23082283
21093