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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23077960_23078502_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23077960 - 23078502
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTCTATTATCA
Flanking Amino Acid:
SYHKPVTSYQEACKIPGIGK
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
75.4
0.57
1
70.5
40.6
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
56.4
0.2
1.9
73.83
37.5

Associated Gene:

Gene:
POLL
Ensembl Gene ID:
ENSAPLG00000010211
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041762
23061191 - 23082283
21093
ENSAPLT00000026747
23072117 - 23082283
10167
ENSAPLT00000010641
23064579 - 23082283
17705