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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23078677_23079463_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23078677 - 23079463
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GTCTGCACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
AATGCCATCACA
Flanking Amino Acid:
VKTAQMWYQQGFRTLDDIRT
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
66.3
0.37
0.9
58.8
37.1
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
48.3
-0.1
2.1
64
42

Associated Gene:

Gene:
POLL
Ensembl Gene ID:
ENSAPLG00000010211
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026747
23072117 - 23082283
10167
ENSAPLT00000010641
23064579 - 23082283
17705
ENSAPLT00000048426
23061988 - 23082283
20296
ENSAPLT00000041762
23061191 - 23082283
21093